PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550337.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 242aa    MW: 26523.3 Da    PI: 8.8955
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.31.9e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+
  XP_010550337.1   2 SCNGCRVLRKGCSENCILRPCIqwiqtAEAQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWRICQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l 
  XP_010550337.1  97 AVETVLH 103
                     *998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.2981107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIQTAE AQGHATIFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WRICQAAVET VLHGGSLQPI PELLTRGGGF  120
AGFPSPISDE TSEICTEILN LRRDVSGDRN TYHHCRFSSS RSRSTVSPPK RKRLASEQPS  180
SGLDLSLKPN FPVKTAPCKE EIRRAGTPSM NSEESVTMTL TRRSTFWGND VGESTKLLNL  240
FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550337.11e-180PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-125LBD37_ARATH; LOB domain-containing protein 37
TrEMBLR0HL691e-130R0HL69_9BRAS; Uncharacterized protein
STRINGBra036040.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-120LOB domain-containing protein 37